Question: Galaxy September 7, 2012 Distribution & News Brief
0
Jennifer Hillman Jackson ♦ 25k wrote:
*Galaxy September 7, 2012 Distribution & News Brief*
http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_09_07
/*Highlights:*/
*
*NCBI BLAST+ has moved* from the Galaxy distribution to the
Galaxy's
Main Tool Shed.
*
*Tool Shed* *is now running Mercurial version 2.2.3*. Many updates
and refinements including UI/metadata changes - read the full
report.
*
*Streamline local setup* with the *Reference Genome rsync Server*:
same builds and indexes as on the public Galaxy Main instance.
*
More *updates to* *Output and Error Handling* including
updated
documentation and enhancements to exit code checks.
*
*TopHat2 / Bowtie2* latest support includes Tophat2 fusions
output,
Bowtie2 sorted BAMs, and a new RNA-seq Tutorial.
*
*Trackster* updates include improved *support for* *bigWig /
bigBed*, new support for *bedGraph*, and a new *search feature for
GFF / GTF / BED* datasets.
*
Plus many *other* *Workflow, API, Source, UI* *features* and
a
summary of *recent Galaxy Update* highlights.
http://getgalaxy.org
http://bitbucket.org/galaxy/galaxy-dist
*new: * $ hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist
*upgrade:* $ hg pull -u -r e6444e7a1685
*
*
*Thanks for using Galaxy!*
Jennifer Jackson & Galaxy Team
--
http://galaxyproject.org
http://usegalaxy.org