Question: Galaxy December 20, 2012 Distribution & News Brief
0
gravatar for Jennifer Hillman Jackson
5.8 years ago by
United States
Jennifer Hillman Jackson25k wrote:
*Galaxy Dec 20, 2012 Distribution & News Brief <http: wiki.galaxyproject.org="" news="" 2012_12_20_distributionnewsbrief="">* *Complete News Brief <http: wiki.galaxyproject.org="" devnewsbriefs="" 2012_12_20="">* *Highlights:* * *Required Metadata Reset* for instances running *Tool Shed <http: wiki.galaxyproject.org="" tool%20shed="">* repositories. Be sure to *learn how <http: wiki.galaxyproject.org="" resettingmetadataforinstalledreposi="" tories="">*. * *Simplified tool config*: all tools (including tool shed repos) can now have handlers and runners assigned based on their "short id". * *New* GFF <http: wiki.galaxyproject.org="" learn="" datatypes#gff="">/GFF3 <http: wiki.galaxyproject.org="" learn="" datatypes#gff3=""> annotation support for *Cuffcompare/merge/diff <http: cufflinks.cbcb.umd.edu="" manual.html="">*. * *More Updated* tools: *TopHat2 <http: tophat.cbcb.umd.edu="" manual.html="">*, *Bowtie2 <http: bowtie-bio.sourceforge.net="" bowtie2="" manual.shtml="">*. * *Multiple pull-requests* contributed by community (thanks!): *#83 <https: bitbucket.org="" galaxy="" galaxy-central="" pull-="" request="" 83="" allow-a-datatypes-merge-method-to="">*, *#85 <https: bitbucket.org="" galaxy="" galaxy-central="" pull-request="" 85="" another-round-of-bug-fixes-and="">*, *#90 <https: bitbucket.org="" galaxy="" galaxy-central="" pull-request="" 90="" patch-to-make-extended_metadata-loader="">*, *#91* <https: bitbucket.org="" galaxy="" galaxy-central="" pull-request="" 91="" fixing-missing-jobwrapper-import="">. * *Issue tracking help* is now covered in detailed in our new wiki: *Using the Galaxy Issue Board <http: wiki.galaxyproject.org="" issues="">* * *GCC2013 Training Day Topic Nominations <http: wiki.galaxyproject.org="" events="" gcc2013="" trainingday=""> are now open* through /*January 11th*/ <http: wiki.galaxyproject.org="" events="" gcc2013="" keydates=""> * *Plus* more *Tool Shed <http: wiki.galaxyproject.org="" tool%20shed="">* updates, *Bug Fixes*, and improvements to *Trackster, UI, Libraries, and Histories*. * getgalaxy.org <http: getgalaxy.org="">* *bitbucket.org/galaxy/galaxy-dist <http: bitbucket.org="" galaxy="" galaxy-dist="">* *galaxy-dist.readthedocs.org <http: galaxy-dist.readthedocs.org=""> * new: $ hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist upgrade: $ hg pull -u -r 36ad8aa7b922 *Best wishes for a safe and happy holiday*, /*The Galaxy Team <http: wiki.galaxyproject.org="" galaxy%20team="">*/ -- Jennifer Jackson http://galaxyproject.org
ADD COMMENTlink written 5.8 years ago by Jennifer Hillman Jackson25k
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