Question: Link To Display Bed Files In Ucsc Genome Browser
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gravatar for Lucy A. Skrabanek
5.1 years ago by
Lucy A. Skrabanek20 wrote:
Dear all, For BED files, there used to be an option in the preview window to visualize them in the UCSC Genome Browser, but that seems to have disappeared. Specifically, from a TopHat/Cufflinks run, I used to be able to visualize the accepted hits, the splice junctions and the assembled transcripts datasets in the UCSC Genome browser by simply clicking on the 'display at UCSC' link. This link is still available for the accepted hits dataset, but seems to have disappeared for the other two datasets. I realize I can still visualize these datasets by downloading them (although this seems somewhat less convenient). Is the loss of this link to UCSC intentional? Thanks, luce
rna-seq cufflinks • 890 views
ADD COMMENTlink modified 5.1 years ago by Jennifer Hillman Jackson23k • written 5.1 years ago by Lucy A. Skrabanek20
0
gravatar for Jennifer Hillman Jackson
5.1 years ago by
United States
Jennifer Hillman Jackson23k wrote:
Hi Luce, We can duplicate the missing link problem and are in the processing of investigating/correcting. Thank you for reporting the issue! Jen Galaxy team -- Jennifer Jackson http://galaxyproject.org
ADD COMMENTlink written 5.1 years ago by Jennifer Hillman Jackson23k
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