Question: Bwa Mapping With Index File From History
gravatar for shamsher jagat
6.0 years ago by
United States
shamsher jagat590 wrote:
I have a Hi-seq Single end data and want to align it to a viral genome and have fasta file of viral genome. I have created index files out side Galaxy (I believe I cannot create index file with in Galaxy). The question which I have is: There are various index files (v.fasta.amb; v.fasta.pac; v.fasta.rbwt; v.fasta.rpac; should I be using all the these files as zip file for index file or one (which one?). Thanks Kanwar
galaxy • 1.5k views
ADD COMMENTlink modified 6.0 years ago by Jennifer Hillman Jackson25k • written 6.0 years ago by shamsher jagat590
gravatar for Jennifer Hillman Jackson
6.0 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hi Kanwar, To use a custom genome, all you need to load is the .fasta file of the genome. Galaxy will do the indexing as part of the mapping job when it is launched. Help with custom genomes in is this wiki: Hopefully this helps to simplify things! Jen Galaxy team -- Jennifer Jackson
ADD COMMENTlink written 6.0 years ago by Jennifer Hillman Jackson25k
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