Question: Galaxy November 14, 2012 Distribution & News Brief
gravatar for Jennifer Hillman Jackson
5.8 years ago by
United States
Jennifer Hillman Jackson25k wrote:
*Galaxy November 14, 2012 Distribution & News Brief <http:"" news="" 2012_11_14_distributionnewsbrief="">* * Complete News Brief <http:"" devnewsbriefs="" 2012_11_14=""> * *Highlights:* * *NGS: Picard (beta)* have moved from the *Galaxy distribution <https:"" galaxy="" galaxy-dist="">* to the*Galaxy Main Tool Shed* <http:""/>. * The *Galaxy Project* is now using /Sphinx <http:""/> Python/ to document the *galaxy-central <http:"">* and *galaxy-dist* <http:""> code base. * The *Intergalactic Utilities Commission* <http:"" reviewingtoolshedrepositories=""> will soon begin reviewing repositories in the *Galaxy Main Tool Shed <http:""/>* (better repos, better tools) * *Tool Shed <http:""/>* *"best practice"* advice: a single tool or a suite of tools per repository? <http:"" atoolorasuiteperrepository=""> * *Tophat <http:""/>*, *Tophat2 <http:"" manual.html="">*, and *Cuffdiff <http:"" manual.html#cuffdiff="">* *updated* to accept gene annotations in *GFF3 <http:"" learn="" datatypes#gff3="">* format. * Multiple *enhancements* to the *API* <http:"" devnewsbriefs="" 2012_11_14#api="">targeting user and history actions. * Plus *updates to* *CloudLaunch <http:"" cloud="">*, new *Security Fixes* <http:"" devnewsbriefs="" 2012_11_14#security_f="" ixes="">, and several usability enhancements for *Datasets*, *Datatypes*, *Tools*, and *Tool Shed* functions. / / / new: $ hg clone galaxy-dist upgrade: $ hg pull -u -r 5dcbbdfe1087 *Thanks for using Galaxy!* Jennifer Jackson <http:"" jenniferjackson=""> & the Galaxy Team <http:"" galaxy%20team=""> /
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