Question: improve on module name resolving
gravatar for manuel.pasieka
21 months ago by
manuel.pasieka30 wrote:


I am using the module dependency resolver to run galaxy task on a cluster, and often have the issue that tools specify their module/tool requirements with a different spelling than the module name on the cluster.

e.g. a tool requires samtools, and the module is called SAMtools.

I currently modify by and the xml configuration file for each tool, adapting the requirement tag. Is there a easier way to do that? One that will not get lost when updating a tool?

thx, Manuel

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ADD COMMENTlink written 21 months ago by manuel.pasieka30
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