Question: Problem Upload Data File
gravatar for Eric Guo
6.1 years ago by
Eric Guo60
Eric Guo60 wrote:
Hi everyone, I'd like to upload my sequencing data file, 36 GB, onto galaxy. My data is on a computer cluster in my institute. So I use ssh shell ftp commands to connect to galaxy and upload the data(ftp> put filename). And the connection appears to be fine as far as I can tell. I tried few times. Every time the uploading is fine in the beginning. However, when about 12 GB of my dataset is uploaded (according to Galaxy upload file page), the upload stops, and an error message pop up in the terminal on my Mac saying "a broken pipeline".  I never had this problem before when I was using FTP programs like CyberDuck. Has anyone have similar problems using ssh command lines to upload data? What's the correct way to upload data from a computer cluster? Thanks in advance for your help. -Eric
galaxy • 1.1k views
ADD COMMENTlink modified 6.1 years ago by Nate Coraor3.1k • written 6.1 years ago by Eric Guo60
gravatar for Nate Coraor
6.1 years ago by
Nate Coraor3.1k
United States
Nate Coraor3.1k wrote:
Hi Eric, I'm not sure what's causing the connection to die, but I'd suggest using rsync so at least it can be resumed. --nate
ADD COMMENTlink written 6.1 years ago by Nate Coraor3.1k
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