Question: Snp And Indel Detection
gravatar for mG
7.1 years ago by
mG10 wrote:
Hello, I am new using Galaxy, I would like ask if it is possible to perform a SNP and INDEL analysis between two SAM files (mutant and wt) with Galaxy. If so, could anyone give a hint in how to proceed? Many thanks for your help in advance, Kind regards, Maria G.
galaxy • 1.1k views
ADD COMMENTlink modified 7.1 years ago by Jennifer Hillman Jackson25k • written 7.1 years ago by mG10
gravatar for Jennifer Hillman Jackson
7.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Maria, Good tool groups to start with are: "NGS: SAM Tools" and "NGS: Indel Analysis". Once you have SNP/Indel the coordinates in BED/Interval format, the tools in group "Operate on Genomic Intervals" can be used to compare the two datasets. Thanks for using Galaxy! Please let us know if you need more help, Jen Galaxy team -- Jennifer Jackson
ADD COMMENTlink written 7.1 years ago by Jennifer Hillman Jackson25k
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