Question: How To Analyze Genes Differential Expression Using Galaxy? Thanks.
0
gravatar for Binbin You
6.3 years ago by
Binbin You50
Binbin You50 wrote:
Hi All, Now I have two  Paired-End samples data ( they are  Next Generation Sequence Data and fastq format) generated from Illumina GA II. Let's say Data Lane1 and Data Lane2. After Quality trimming and Adapter trimming, I want to check the Genes Differential Expression between these two samples. How could I do that in Penn State version Galaxy or other versions with only having Reference File?  Thanks a lot in advance! Best wishes, Bin
galaxy • 2.7k views
ADD COMMENTlink modified 6.3 years ago by Jennifer Hillman Jackson23k • written 6.3 years ago by Binbin You50
0
gravatar for Jennifer Hillman Jackson
6.3 years ago by
United States
Jennifer Hillman Jackson23k wrote:
Hello Bin, If your data is RNA-seq, then this tutorial can get you started with the basics: http://main.g2.bx.psu.edu/u/jeremy/p/galaxy-rna-seq-analysis-exercise http://main.g2.bx.psu.edu/u/jeremy/p/transcriptome-analysis-faq Hopefully this helps, Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/Support
ADD COMMENTlink written 6.3 years ago by Jennifer Hillman Jackson23k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 47 users visited in the last hour