Question: How To Analyze Genes Differential Expression Using Galaxy? Thanks.
0
gravatar for Binbin You
7.2 years ago by
Binbin You50
Binbin You50 wrote:
Hi All, Now I have two  Paired-End samples data ( they are  Next Generation Sequence Data and fastq format) generated from Illumina GA II. Let's say Data Lane1 and Data Lane2. After Quality trimming and Adapter trimming, I want to check the Genes Differential Expression between these two samples. How could I do that in Penn State version Galaxy or other versions with only having Reference File?  Thanks a lot in advance! Best wishes, Bin
galaxy • 3.6k views
ADD COMMENTlink modified 7.2 years ago by Jennifer Hillman Jackson25k • written 7.2 years ago by Binbin You50
1
gravatar for Jennifer Hillman Jackson
7.2 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Bin, If your data is RNA-seq, then this tutorial can get you started with the basics: http://main.g2.bx.psu.edu/u/jeremy/p/galaxy-rna-seq-analysis-exercise http://main.g2.bx.psu.edu/u/jeremy/p/transcriptome-analysis-faq Hopefully this helps, Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/Support
ADD COMMENTlink written 7.2 years ago by Jennifer Hillman Jackson25k
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