Question: differential expression exon-level
gravatar for ramon.garcia
3.4 years ago by
ramon.garcia0 wrote:

Hi everybody,

I've been using cufflinks in order to perform differential expression between to groups of samples. The cuffdiff output are lists of differentially expressed genes, transcripts, TSS, etc. However, none of the output files are exon level qualification or differentially expressed exons.

Does anybody know how to get exon-level quantification and differential expression? 

Thanks a lot



ADD COMMENTlink modified 3.3 years ago by Jennifer Hillman Jackson25k • written 3.4 years ago by ramon.garcia0
gravatar for Jennifer Hillman Jackson
3.3 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Maybe try Ballgown? A wrapped version of the tool is in the Tool Shed for use in a local or cloudman Galaxy.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 3.3 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 176 users visited in the last hour