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Question: Genomic Intervals Coverage: Csv Of 2Nd Dataset Identifiers
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gravatar for Kumar, Charu Gupta
5.7 years ago by
Kumar, Charu Gupta • 10
Kumar, Charu Gupta • 10 wrote:
Hi, My question is about "operating on genomic intervals, Coverage" tool. I wanted a csv list of identifiers (c4) in the second dataset that cover each interval in the first dataset. How would I go about getting such a list? Thank you so much in advance. Best, Charu Charu Gupta Kumar, Ph.D.
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modified 5.6 years ago by Jennifer Hillman Jackson ♦ 25k • written 5.7 years ago by Kumar, Charu Gupta • 10
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gravatar for Jennifer Hillman Jackson
5.6 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello Charu, To get the identifiers from column 4 into a single, tab delimited list from an interval/bed file, use the "Group" tool, like this: To convert the tabular delimiter to a comma, use a text editor after download. Galaxy in a local install could also be modified to do the replace, I can think of a few places - with "Convert delimiters" in Text Manipulation" being perhaps the simplest choice to customize. Best, Jen Galaxy team -- Jennifer Hillman-Jackson Galaxy Support and Training http://galaxyproject.org
ADD COMMENT • link written 5.6 years ago by Jennifer Hillman Jackson ♦ 25k
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