Question: Tophat is deprecated; use replacement mapper HISAT2
0
gravatar for bazghazia7
14 days ago by
bazghazia70
bazghazia70 wrote:

Hi, I cannot see tophat in RNA analysis tool please guide me who is the error and how should I resolve it.

ADD COMMENTlink modified 14 days ago by Jennifer Hillman Jackson25k • written 14 days ago by bazghazia70
0
gravatar for Jennifer Hillman Jackson
14 days ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Tophat has been deprecated and the replacement tool is HISAT2. For a current example RNA-seq tool usage/workflow, please start here:

Galaxy Tutorials: https://galaxyproject.org/learn/

The tool is still on the Public Main server at https://usegalaxy.org in the tool panel for now. Use the search at the top of the tool panel to find it. Since the tool is deprecated, it may fail or produced odd results, so if you choose to use it, keep that in mind. Bug reports or questions do not need to be sent in as there will be no further changes or updates. Instead, switch to using HISAT2 going forward.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 14 days ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 115 users visited in the last hour