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• TopHat is not running
  Hi, I uploaded TopHat jobs from last Friday and it hasn't start running yet. Is there a proble...
• TOPHAT ERROR tool execution
  Hi,   i tried running my datasets and tophat gives  error all the time.  Thanks
• Version Tophat And Cufflinks
  Hi,   May I ask what is the version of TopHat and cufflinks in the galaxy? Thanks a lot! weimin zhao
• Tophat vs Bowtie2
  Hello, I took the fasq files and ran Tophat then Bowtie2. Is it okay to run tophat first then bo...
• Error message in Tophat
  I am receiving the message "an error occurred setting the metadata for this dataset" on all jobs ...
• Tophat fails again and again
  Hi Jen, I have some problems with one of the dataset and tophat fails again and again. Will you p...
• Tophat Version In Galaxy
  Dear all: I have GALAXY installed in a UNIX server. BOWTIE works fine but TOPHAT and CUFFDIFF cra...
• Tophat
  Hello, I am a new galaxy user, still trying to find my way around. Is there a way to run Tophat ...
• Tophat vs HISAT
  Hi, I've been using Tophat to align RNA-seq reads followed by Cufflinks to estimate FPKM. Now tha...
• tophat failure job
  i have run fastqgroomer again on the sra sequences and waiting for it to complete. its result i p...
• Tophat is not anymore among the galaxy tools
  I have been using tophat to quantify sequences in my RNAseq analysis along this year.. But today,...
• Tophat for Illumina disappeared!
  I was working on Tophat Illumina and suddenly there is no option for it anymore. I don't know wha...
• Error for TopHat
  Hello, I could not use TopHat for RNA-seq. I received error messages writing server error many t...
• Tophat couldn't work.
  I have been working on Tophat and it couldn't run. Continuously i got "Tool execution failed". Ho...
• How to make multiple Tophats inside a workflow to run sequentially rather than simultaneously?
  In my workflow on Galaxy, I have 6 fastq samples to run through Tophats and their output bam fil...
• Does Tophat Output *.Accepted Hits File Contain Headers?
  Dear All, I want to use the Tophat output files with ".accepted hits" to do analysis outside Gal...
• Bam File After Tophat Run
  I am running RNAseq in Galaxy after running Tophat I am trying to save Bam file but by default it...
• Error In Tophat
  I have ran Tophat v1.4.0 and it is marked red and has an error " long_spanning_reads". What does ...
• Tophat jobs take too long
  I submitted some Tophat jobs 24 hours again, but I am still waiting. Any advice and suggestion? T...
• Tophat is deprecated; use replacement mapper HISAT2
  Hi, I cannot see tophat in RNA analysis tool please guide me who is the error and how should I re...
• Can Tophat Take Snps Into Account?
  Hi, I have been mapping my RNA-seq data to mouse genome from a different mouse strain using TopHa...
• Tophat not running
  I started a tophat job about 24 hours ago and it still hasn't started running. Have you been havi...
• Tophat not Running
  Hi I have had Tophat queued for running on the main Galaxy Instance since last Friday (5 days). ...