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Question: Get galaxy terminal sh run.sh
1
gravatar for collinjbs
8 weeks ago by
collinjbs • 10
collinjbs • 10 wrote:

Hello, I am trying to get galaxy from https://galaxyproject.org/admin/get-galaxy/; I entered in

$ git clone -b release_18.05 https://github.com/galaxyproject/galaxy.git

everything was running smoothly until i encountered this error

ImportError: dlopen(/Users/$$$/galaxy/.venv/lib/python2.7/site-packages/uwsgi.so, 2): Library not loaded: /usr/local/opt/pcre/lib/libpcre.1.dylib Referenced from: /Users/$$$/galaxy/.venv/lib/python2.7/site-packages/uwsgi.so Reason: image not found

I have MacOSX

I am in the Genomic Data Analysis program offered on coursera through John Hopkins university, I will also be using Galaxy for my work as I am a Process Development Engineer,

any information would help

Thanks
run.sh get-galaxy osx galaxy local • 94 views
ADD COMMENT • link •
modified 7 weeks ago by Jennifer Hillman Jackson ♦ 25k • written 8 weeks ago by collinjbs • 10
2
gravatar for Martin Čech
7 weeks ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

You are facing a problem described here: https://github.com/galaxyproject/galaxy/issues/6470

The following command in Galaxy's root should get you up to speed: 

./.venv/bin/pip uninstall -y uwsgi && ./.venv/bin/pip install --index-url https://wheels.galaxyproject.org/simple --no-cache-dir --no-binary :all: uwsgi==2.0.17.1
ADD COMMENT • link modified 7 weeks ago • written 7 weeks ago by Martin Čech ♦♦ 4.9k
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