Question: Downloading files from ENA problems
0
gravatar for trevor.blain
7 days ago by
trevor.blain10
trevor.blain10 wrote:

I am using the European Nucleotide Archive in order to load the fastq files into galaxy. When the job is done running and turns green, there is nothing in the file... Just says 0 lines file: txt. It was working fine from the same Geo accession data early today.

software error galaxy • 43 views
ADD COMMENTlink modified 6 days ago by Jennifer Hillman Jackson25k • written 7 days ago by trevor.blain10
0
gravatar for Jennifer Hillman Jackson
6 days ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

The ENA server is probably busy. Expand the dataset and it will probably note something about this in the comments.

There is a known issue with the datatype assigned to data when retrieving it into Galaxy using the "Send to Galaxy" link. It needs to be modified, how to is explained in this post: https://biostar.usegalaxy.org/p/28718/. We plan to fix the tool near-term.

So, be sure to change the datatype on any data downloaded using that method. Alternatives are in the other post.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 6 days ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 106 users visited in the last hour