Question: SnpEff eff regulation options
gravatar for carey.lambert
11 weeks ago by
carey.lambert0 wrote:

SnpEff eff has started demanding Regulation options where it previously did not require anything to be entered in this box. I'm getting the message "Parameter regulation requires a value, but has no legal values defined.". What are the options to enter into this box? Thanks, Carey

snpeff annotation snp galaxy index • 106 views
ADD COMMENTlink modified 11 weeks ago by Jennifer Hillman Jackson25k • written 11 weeks ago by carey.lambert0
gravatar for Jennifer Hillman Jackson
11 weeks ago by
United States
Jennifer Hillman Jackson25k wrote:

Hi Carey,

The SnpEff tool wrappers were just updated a few days ago to version 4.3+T.galaxy3. The updated versions are not on the* public servers yet. Reference: Main Tool Shed repository

This input should be optional as far as I know so there might be a bug or new usage requirements. As you know, there were a few issues with these tools previously.

We should report this to the IUC (authors) at their Gitter channel: I started the conversation using your post to describe the issue. Please join in at Gitter. Commenting back with the tool version you are using and where it is being used (which public server, or if a local/docker, which version of that as well) will help with troubleshooting.

Thanks for reporting! Jen, Galaxy team

ADD COMMENTlink written 11 weeks ago by Jennifer Hillman Jackson25k
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