Question: C: Bias Correction : Locally cached human reference sequence data
gravatar for a.morris
12 months ago by
a.morris40 wrote:

Hello Jennifer, your most answer correctly identified a problem with Cuffdiff returning red boxes last week. However this week I am using Cufflinks. Under the Biass correction option (Yes) and cached Ref sequence data, the using reference genome only returns "no options available. Last time I used Cuffdiff, hg19 was detected and entered.

cufflinks • 480 views
ADD COMMENTlink modified 12 months ago by Jennifer Hillman Jackson25k • written 12 months ago by a.morris40

Just found out that the Cufflinks detects only hg_g1k_v37 and not hg19, which solves the problem

ADD REPLYlink written 12 months ago by a.morris40
gravatar for Jennifer Hillman Jackson
12 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hi Alex,

Ok, glad you discovered what that problem was. The database metadata assigned to the input acts as a filter for the content of that option's pull down menu (and the genome select menu for certain other tools as well).

Thanks for the follow-up! Jen, Galaxy team

ADD COMMENTlink written 12 months ago by Jennifer Hillman Jackson25k
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