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Question: C: Bias Correction : Locally cached human reference sequence data
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gravatar for a.morris
12 months ago by
a.morris • 40
a.morris • 40 wrote:

Hello Jennifer, your most answer correctly identified a problem with Cuffdiff returning red boxes last week. However this week I am using Cufflinks. Under the Biass correction option (Yes) and cached Ref sequence data, the using reference genome only returns "no options available. Last time I used Cuffdiff, hg19 was detected and entered.

cufflinks • 480 views
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modified 12 months ago by Jennifer Hillman Jackson ♦ 25k • written 12 months ago by a.morris • 40
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Just found out that the Cufflinks detects only hg_g1k_v37 and not hg19, which solves the problem

ADD REPLY • link written 12 months ago by a.morris • 40
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gravatar for Jennifer Hillman Jackson
12 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hi Alex,

Ok, glad you discovered what that problem was. The database metadata assigned to the input acts as a filter for the content of that option's pull down menu (and the genome select menu for certain other tools as well).

Thanks for the follow-up! Jen, Galaxy team
ADD COMMENT • link written 12 months ago by Jennifer Hillman Jackson ♦ 25k
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