Question: Error While Submitting A Job To Sge Queue
0
Akash Mohan • 20 wrote:
Hi All,
I have encountered this strange problem while submitting a job to an
sge queue. I have used the unified method wherein the galaxy setup is
made available on NFS. I have mounted the galaxy directory on the
execution host.
As I submit a job through the web ui I could trace that the job does
get submitted to the queue. But however it fails with an error as
below:
galaxy.jobs.runners.sge DEBUG 2009-04-14 08:36:09,252 (15/15) state
change: job finished, but failed
galaxy.jobs ERROR 2009-04-14 08:36:09,493 Unable to cleanup job 15
Traceback (most recent call last):
File "/usr/galaxy/galaxy-6c555b0460f1/lib/galaxy/jobs/__init__.py",
line 523, in cleanup shutil.rmtree( self.working_directory )
File "/usr/local/lib/python2.5/shutil.py", line 167, in rmtree
onerror(os.listdir, path, sys.exc_info())
File "/usr/local/lib/python2.5/shutil.py", line 165, in rmtree names
= os.listdir(path)
OSError: [Errno 2] No such file or directory:
'./database/job_working_directory/15'
Where could error be. Kindly let me know if anybody has faced error
before.
Thanks a ton
Akash
DISCLAIMER
==========
This e-mail may contain privileged and confidential information which
is the property of Persistent Systems Ltd. It is intended only for the
use of the individual or entity to which it is addressed. If you are
not the intended recipient, you are not authorized to read, retain,
copy, print, distribute or use this message. If you have received this
communication in error, please notify the sender and delete all copies
of this message. Persistent Systems Ltd. does not accept any liability
for virus infected mails.