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• Galaxy is not loading job_conf.xml ?
  Hi, I have modified the job_conf.xml according the post of jmchilton so the tools can use multi-...
• Filter synthax for nested conditionals
  Hello, I write a tool and I have a problem with the outputs generated : My script is : <to...
• Problem to upload files to a data library in Galaxy local
  Hi, I've recently installed galaxy locally on my computer, I got it run but I can't upload files...
• Adding a new tool
  I have a new local install of Galaxy on my own server and I'm trying to define a new tool for a c...
• Parallelizing BAM calculations using Intervals specified in Text File
  Greetings Galaxy, I have been attempting to parallelize some tools which use BAM files as input....
• Trying to see data from modMine in Galaxy
  I wish to visualise Chip-Seq data that are stored in Modmine. I have first downloaded a GFF3 file...
• Single and Multi threading on one machine
  I am trying to set up galaxy tools either single or multithreaded on a 24 core machine. So what ...
• Cannot update file via FTP
  I'm currently having an issue uploading >2GB fastq file to the Galaxy. I tested Cyberduck and ...
• import data from filesystem into the library without copying it
  Under Admin I created a linked dataset for file > 2GB. The Galaxy message says "This job is r...
• <filter> Tags not working for nested conditionals.
  Hi! I have written a tool that lets the user deside what to do, and depending on those decisions ...
• HTSeq-Count on Command Line
  Dear all So basically, I have a .bam file(cut_L7_1_5.bam) and i installed HTSeq-Count onto my lo...
• Error when install tool from galaxy tool shed
  Hello Everyone I upload my softsearch tool in to galaxy tool shed for that I create two reposito...
• ERROR MESSAGE: Your input file has a malformed header: VCFv4.2 is not a supported version - Eval Variant Tool
  Hi, I am getting this error when running eval variant tool from GATK ver 2.8 in galaxy. ERROR...
• Correctly installing to toolshed
  Hi, I'm new to publishing tools/repository on the toolshed.  I have used planemo and lint and tes...
• How to know the tool id name in job_conf.xml?
   Hi, I have added some tools in my jobs_conf file so they can use more than one cpu, however I pr...
• tag <filter> output with select box galaxy
  Hi everybody, i want to know if it is possible to use the &lt;filter&gt; tag for output from typ...
• Can't get Galaxy to run on CentOS 7.0.1406 (Core)
  I'd say I'm an intermediate Linux user. I'm trying to get Galaxy setup on a new install of CentOS...