Hi, I'm new to publishing tools/repository on the toolshed. I have used planemo and lint and tests as well as serve all worked. I was able to use the tool. However, when I uploaded it onto the test tool shed and imported the tool on a cloud instance, I keep getting this error when running job:
Fatal error: Exit code 2 () Can't open perl script "rm_consecutive_sameScore.pl": No such file or directory
Please advise! I've been downloading and looking at what others did but I still can't figure this out.
The first few lines of my .xml file looks like this
<tool id="jose123" name="removes_consecutive_same_scored_bins" version="0.1.0"> <requirements> </requirements> <stdio> <exit_code range="1:" /> </stdio> <command interpreter="perl">./rm_consecutive_sameScore.pl "$input1" "$output1" </command> <inputs> <param type="data" name="input1" format="bed" />
Thank you in advance!