Question: Galaxy is not loading job_conf.xml ?
0
vebaev • 130 wrote:
Hi,
I have modified the job_conf.xml according the post of jmchilton so the tools can use multi-cores - https://biostar.usegalaxy.org/p/10158/#10261?
,nevertheless I noticed that bowtie2 still using 1 cpu core.
So I spoiled the file inserting non xml test and Galaxy just load fine as before, which makes me think Galaxy is just lot loading the job_conf.xml on the first place (my thoughts)?
I have the file in the same place as galaxy.ini
-rw-r--r--. 1 1450 1450 49120 Aug 4 14:29 galaxy.ini -rwxr-xr-x. 1 1450 1450 1115 Aug 4 14:35 job_conf.xml
and the content is:
<job_conf>
<plugins>
<plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="8"/>
<plugin id="multilocal" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="2"/>
</plugins>
<handlers>
<handler id="main" />
</handlers>
<destinations default="local">
<destination id="local" runner="local"/>
<destination id="multicore8" runner="multilocal">
<param id="local_slots">8</param>
</destination>
</destinations>
<tools>
<tool id="bowtie2" destination="multicore8" />
<tool id="bowtie" destination="multicore8" />
<tool id="deeptools" destination="multicore8" />
<tool id="cufflinks" destination="multicore8" />
<tool id="cuffdiff" destination="multicore8" />
<tool id="cuffmerge" destination="multicore8" />
<tool id="tophat2" destination="multicore8" />
</tools>
</job_conf>
