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Question: sequencing adapter trim
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gravatar for javier.ordonez
3.3 years ago by
javier.ordonez • 0
United States
javier.ordonez • 0 wrote:

I'm trying to trim the adapters from sanger/illumina sequences in Galaxy. The adapter selection menu is not giving me any options. Do I need to upload the sequences of the adapter myself? I thought that they were provided automatically.
galaxy • 955 views
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modified 3.0 years ago by rakeshsaraswat691 • 30 • written 3.3 years ago by javier.ordonez • 0
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gravatar for rakeshsaraswat691
3.0 years ago by
rakeshsaraswat691 • 30
India
rakeshsaraswat691 • 30 wrote:

U have to provide it....probably u can get it from fastqc's 'overrepresented ' and 'adapter' sequence report.

 
ADD COMMENT • link written 3.0 years ago by rakeshsaraswat691 • 30

See the tool form for how to format the adaptor file. Input format is very important for a successful tool run.

ADD REPLY • link written 3.0 years ago by Jennifer Hillman Jackson ♦ 25k
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