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Question: SICER and mm10
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gravatar for giorgia.rizzari
5 months ago by
giorgia.rizzari • 0
giorgia.rizzari • 0 wrote:

Hi, I am trying to analyze my chip-seq for Histon modifications by the use of SICER. Once I select the samples and the input the program gives me the following error: “SICER is not available for the genome”.

My chip-seq is on mm10 and I inserted the right genome along all the steps. I read somewhere that this genome is not already available on galaxy, is it true?
mm9 sicer mm10 galaxy chip-seq • 199 views
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modified 5 months ago by Jennifer Hillman Jackson ♦ 25k • written 5 months ago by giorgia.rizzari • 0
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gravatar for Jennifer Hillman Jackson
5 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

There is an open ticket to add more genomes to this tool. I just asked for an update, please follow progress or comment here: https://github.com/galaxyproject/tools-devteam/issues/390

The genome mm10 is available for most tools, just not this one yet. The alternatives are to use mm9 with this tool or use mm10 based data with a different tool.

Galaxy tutorials: https://galaxyproject.org/learn/

Thanks! Jen, Galaxy team
ADD COMMENT • link modified 5 months ago • written 5 months ago by Jennifer Hillman Jackson ♦ 25k
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