Question: Integrated variant analysis pipeline
0
gravatar for lmarkal.wadhwani
4 months ago by
lmarkal.wadhwani0 wrote:

I am running an Integrated Variant analysis pipeline. Please see page link below for reference https://usegalaxy.org/u/jeremy/p/cancer-analyses I am having problems annotating data using DGI (Drug-gene-interaction database). I can provide more details...

software error dgi • 179 views
ADD COMMENTlink modified 4 months ago • written 4 months ago by lmarkal.wadhwani0
1
gravatar for Jennifer Hillman Jackson
4 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

There is an open known issue with this tool: https://github.com/galaxyproject/tools-devteam/issues/504

If that is your problem, then follow the ticket for updates. You can also comment on it or upvote it, both can bump up the priority for a fix.

If that is not your problem, more details will help. This is an older tutorial and might not work the same exact way as it did before.

First, double check that you have basic usage correct. If that checks out, report the problem as a bug report and/or shared history link. The issue is probably too complex to troubleshoot effectively here. How to report a problem with the usage context or find existing known problems like the one above are both covered in the FAQs here: https://galaxyproject.org/support/#unexpected-results

You might consider following or modeling your own analysis using a more current tutorial: https://galaxyproject.org/learn/

Thanks! Jen, Galaxy team

ADD COMMENTlink written 4 months ago by Jennifer Hillman Jackson25k
0
gravatar for lmarkal.wadhwani
4 months ago by
lmarkal.wadhwani0 wrote:

Hi Jen, Thanks a lot for the quick response. Will go with your recommendations! I will keep you posted with developments :-)

Best

Lmarkal

ADD COMMENTlink written 4 months ago by lmarkal.wadhwani0
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