I am running an Integrated Variant analysis pipeline. Please see page link below for reference https://usegalaxy.org/u/jeremy/p/cancer-analyses I am having problems annotating data using DGI (Drug-gene-interaction database). I can provide more details...
There is an open known issue with this tool: https://github.com/galaxyproject/tools-devteam/issues/504
If that is your problem, then follow the ticket for updates. You can also comment on it or upvote it, both can bump up the priority for a fix.
If that is not your problem, more details will help. This is an older tutorial and might not work the same exact way as it did before.
First, double check that you have basic usage correct. If that checks out, report the problem as a bug report and/or shared history link. The issue is probably too complex to troubleshoot effectively here. How to report a problem with the usage context or find existing known problems like the one above are both covered in the FAQs here: https://galaxyproject.org/support/#unexpected-results
You might consider following or modeling your own analysis using a more current tutorial: https://galaxyproject.org/learn/
Thanks! Jen, Galaxy team
Hi Jen, Thanks a lot for the quick response. Will go with your recommendations! I will keep you posted with developments :-)