Question: (Closed) Variant calling query with Unified Genotyper (deprecated GATK tool)
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v4savaishnavi • 30 wrote:
Hi,
I am trying to do exome analysis for Single Nucleotide variants detection. I have a doubt on unified genotyper output specified below.
Whether this output has any connection with variants. Does this output shows Variant calling information. Please help me regarding this query. Thanks in advance.
**Visited bases 824222868
Callable bases 737692889
Confidently called bases 490658496
% callable bases of all loci 89.502
% confidently called bases of all loci 59.530
% confidently called bases of callable loci 66.513
Actual calls made 237192**
Hello v4savaishnavi!
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