Question: (Closed) Variant calling query with Unified Genotyper (deprecated GATK tool)
gravatar for v4savaishnavi
6 months ago by
v4savaishnavi30 wrote:


I am trying to do exome analysis for Single Nucleotide variants detection. I have a doubt on unified genotyper output specified below.

Whether this output has any connection with variants. Does this output shows Variant calling information. Please help me regarding this query. Thanks in advance.

**Visited bases                                824222868
Callable bases                               737692889
Confidently called bases                     490658496
% callable bases of all loci                 89.502
% confidently called bases of all loci       59.530
% confidently called bases of callable loci  66.513
Actual calls made                            237192**
ADD COMMENTlink written 6 months ago by v4savaishnavi30

Hello v4savaishnavi!

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ADD REPLYlink written 6 months ago by Jennifer Hillman Jackson25k
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