Question: Filter BAM file by size
gravatar for aparicio2457
7 months ago by
USA - Alexandria VA
aparicio24570 wrote:

I'm attempting to restrict the BAM file using the Filter tool to a size less than 100,000 bp. How do I set up the Filter?

picard samtools filter bam • 319 views
ADD COMMENTlink modified 7 months ago by Jennifer Hillman Jackson25k • written 7 months ago by aparicio24570
gravatar for Jennifer Hillman Jackson
7 months ago by
United States
Jennifer Hillman Jackson25k wrote:


To be clear, you want to filter for insert sizes less than 100k bases? Try this:

Filter BAM datasets on a variety of attributes (Galaxy Version 2.4.1) BAM dataset(s) to filter

Condition > Filter > Select BAM property to filter on > choose insertSize > then set the expression to <=100000

Thanks, Jen, Galaxy team

ADD COMMENTlink written 7 months ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 168 users visited in the last hour