Question: (Closed) Problems with Bamtools: Filter BAM
gravatar for joseph_kelly_94-jk
6 months ago by
joseph_kelly_94-jk0 wrote:


I seem to have a problem with filtering merged BAM files following a recent update. I am trying to filter based on a Map quality of >=30, selection of proper pairs and selection of mapped reads. However, when entered into galaxy the filter rules aren't in accordance with what I entered. It appears as Map quality >=30, select proper pair (true) select proper pair (false). Has anyone else experienced similar problems?

rna-seq bamtools filter bam • 248 views
ADD COMMENTlink written 6 months ago by joseph_kelly_94-jk0

Hello joseph_kelly_94-jk!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.


PS: Please see the linked issue ticket for details about the select problems.
ADD REPLYlink written 6 months ago by Jennifer Hillman Jackson25k
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