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Question: Tool error due to format or content problem
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gravatar for arundineshraju97
7 months ago by
arundineshraju97 • 0
arundineshraju97 • 0 wrote:

Fatal error: Exit code 1 () Picked up _JAVA_OPTIONS: -Djava.io.tmpdir=/galaxy-repl/main/jobdir/018/989/18989452/_job_tmp -Xmx7g -Xms256m Failed to process file Filter_by_quality_on_data_117 java.lang.ArrayIndexOutOfBoundsException: -1 at uk.ac.babraham

how to fix this error in galaxy ?
content format galaxy datatype dataset • 255 views
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modified 7 months ago by Jennifer Hillman Jackson ♦ 25k • written 7 months ago by arundineshraju97 • 0
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gravatar for Jennifer Hillman Jackson
7 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This looks like a data input problem. First, check these items:

  1. The reference genome used for all steps is exactly the same.
  2. The BAM input actually contains hits, not just a header.

Full troubleshooting help that also includes details for the above:

Thanks, Jen, Galaxy team
ADD COMMENT • link written 7 months ago by Jennifer Hillman Jackson ♦ 25k
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