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• Trinity error on usegalaxy.org
  Hello, I am running the trinity on usegalaxy.org , and I got an error message as below. workdir ...
• BWA-MEM mapping Taking longer time
  Hi Folks, I am trying to run BWA-MEM mapping, its taking longer time. Can you please look into i...
• Reason "The job is waiting to run" idle for 3 hours
  The job was created at this below time, kindly suggest what needs to be done in such a case. Cre...
• PAUSE 3 results not displaying
  Hello, I'm quite new to Galaxy and I have been looking around the tutorials to try and find an a...
• self hosted galaxy instance hicexplorer commands not found
  Hi, We have a self hosted galaxy instance running on release_16.04 (0ba99fe246099cc1827f71f2722d2...
• usegalaxy.org job length
  Greetings, I used the join command at usegalaxy.org and would like to know how long the job ran:...
• Running tests failed sending jobs to PBS
  Good morning, We are trying to deploy Galaxy for our researchers and we have quite a few errors ...
• Galaxy API: Re-running job causes error
  Hello, I am using the galaxy API to rerun a tool doing a POST to /api/tools with action set to "...
• API: get /tools/{tool-id}/build gives Uncaught exception error (but depends on galaxy server)
  Hello! I am sending a GET request to /api/tools/{tool-id}/build with valid key and history_id pa...
• Uploading mgf files throws error (Galaxy-P workflow)
  Dear group, uploading an mgf formatted file results in the error below and the file is not uploa...
• Cuffdiff Fatal error: Exit code 1 () Error: number of labels must match number of conditions number of labels must match number of conditions
  Hi! I ran into a problem using Cuffdiff. (I am using a local version of galaxy). When I try to ...
• Cuffdiff Changes
  Hi, I am wondering why Cuffdiff suddenly gives many more significant DE genes? I have used same ...
• Usage of $__app__ for galaxy tool metadata retrieval
  Hi everyone, I have been looking for a way to get at the metadata associated with history items u...
• Galaxy Tool Error Report From Johnwu@Ibms.Sinica.Edu.Tw
  GALAXY TOOL ERROR REPORT This error report was sent from the Galaxy instance hosted on the serv...
• Galaxy Tool Error Report From Johnwu@Ibms.Sinica.Edu.Tw
  GALAXY TOOL ERROR REPORT This error report was sent from the Galaxy instance hosted on the serv...
• Galaxy SGE Cluster, Planemo testing?
  Hi, Is it possible to use "planemo test" functionality on an SGE cluster? I can correctly run a ...
• Personalised tool not running in local galaxy (always yellow but not sending command)
  Hi, I am creating a wrapper to run a personalised tool in my local galaxy installation. I tested...
• Galaxy - SGE, job terminated but failed
  Hi everyone, I come back to you with another problem  : I tried to set Galaxy to our cluster. I ...
• Bioblend error for conditional input
  Using the python bioblend package to send my job into Galaxy, I have an error when I try to send ...
• How can I find a user API key using the bioblend library?
  Hi ! I'm working on a **python application** who interact with a Galaxy server. For this purpose...