On running Prokka we have:
The Galaxy framework encountered the following error while attempting to run the tool:
Traceback (most recent call last): File "/media/home/galaxy/galaxy/lib/galaxy/jobs/runners/__init__.py", line 170, in prepare_job job_wrapper.prepare() File "/media/home/galaxy/galaxy/lib/galaxy/jobs/__init__.py", line 913, in prepare self.dependency_shell_commands = self.tool.build_dependency_shell_commands(job_directory=self.working_directory) File "/media/home/galaxy/galaxy/lib/galaxy/tools/__init__.py", line 1342, in build_dependency_shell_commands tool_instance=self File "/media/home/galaxy/galaxy/lib/galaxy/tools/deps/__init__.py", line 104, in dependency_shell_commands return [dependency.shell_commands(requirement) for requirement, dependency in requirement_to_dependency.items()] File "/media/home/galaxy/galaxy/lib/galaxy/tools/deps/resolvers/conda.py", line 249, in shell_commands self.build_environment() File "/media/home/galaxy/galaxy/lib/galaxy/tools/deps/resolvers/conda.py", line 244, in build_environment raise DependencyException("Conda dependency seemingly installed but failed to build job environment.") DependencyException: Conda dependency seemingly installed but failed to build job environment.
Tool execution generated the following error message:
Conda dependency seemingly installed but failed to build job environment.
How to fix that?