Question: Trying to use trimmomatic but it won't pick up my fast files?
gravatar for stephoates
8 months ago by
stephoates0 wrote:


I'm trying to analyse a large dataset using galaxy and i'm only fairly early on - i've performed the basic quality assessment, but can't seem to go to the next step with trimmomatic as it says i don't have any fastq files available! Can someone tell me what i've done wrong please?

ADD COMMENTlink modified 8 months ago by Jennifer Hillman Jackson25k • written 8 months ago by stephoates0
gravatar for Jennifer Hillman Jackson
8 months ago by
United States
Jennifer Hillman Jackson25k wrote:


Double check that the correct datatype assigned is to your data. If Galaxy did not autodetect fastqsanger, or you did not specifically assign fastqsanger.gz during upload, your data might not be in this format (requires grooming).

FAQs for how to check and reformat the data for use with tools, plus how to assign datatype:

Thanks! Jen, Galaxy team

ADD COMMENTlink written 8 months ago by Jennifer Hillman Jackson25k
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