I just noticed that Circos plots are now incorporated into Galaxy's
visualization methods which is awesome! However, I'm a bit lost as to
kinds of data I can load into Circos and I cannot find much
so I hope you guys can help out.
1. I tested it using a bigWig and a BED file. Both were loaded nicely
Circos, but I was surprised to see that the visualization of both
looked exactly the same, i.e. both file types seemed to be interpreted
histograms/coverage data. From the Circos plots I've seen in
I assumed that BED files should be visualized as straight lines,
genome regions (rather than a coverage). Am I doing anything wrong?
rather, how should I modify the BED file so that its content is simply
interpreted as genomic regions?
2. In the Galaxy publication www.biomedcentral.com/1471-2164/14/397)
"line data" is mentioned for displaying connecting lines in the center
the circle - could you give me an example line of how this kind of
needs to be formated?
It would be great to make much more use of Circster! Thanks a lot!