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Question: FreeBayes "error while loading shared libraries"
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gravatar for komal
10 months ago by
komal • 0
komal • 0 wrote:

While using Freebayes for VCF manipulation, I encountered the following error:- "freebayes: error while loading shared libraries: libbz2.so.1.0: cannot open shared object file: No such file or directory" The .bam file was obtained using bowtie2 after the paired-end reads were aligned to a reference genome sequence. Please help me out.

Regards, Komal

dependencies snp galaxy error freebayes • 560 views
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modified 10 months ago by Jennifer Hillman Jackson ♦ 25k • written 10 months ago by komal • 0

Hello, I am running some tests to determine if this is a server-side dependency problem with this version of the tool (the most current, 1.1.0.46-0). More feedback soon. Jen

ADD REPLY • link modified 10 months ago • written 10 months ago by Jennifer Hillman Jackson ♦ 25k
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gravatar for Jennifer Hillman Jackson
10 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This is a new confirmed server-side issue at Galaxy Main https://usegalaxy.org.

A ticket for the correction with full details including the current workaround is here. I credited you for discovering the issue. https://github.com/galaxyproject/usegalaxy-playbook/issues/79

Thank you for reporting the problem! Jen, Galaxy team
ADD COMMENT • link written 10 months ago by Jennifer Hillman Jackson ♦ 25k
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