Question: Most Popular Linux Flavour For Galaxy
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gravatar for Matloob Khushi
7.5 years ago by
Matloob Khushi10 wrote:
Hello Galaxy Users We are anticipating setting up a local instance of Galaxy and wondering what is the most popular (or best) flavour of Linux people out there using. I wonder which OS on UseGalaxy.org has been used. Thanks for your help. Regards Matloob PhD Candidate
galaxy • 1.0k views
ADD COMMENTlink modified 7.5 years ago by Nate Coraor3.2k • written 7.5 years ago by Matloob Khushi10
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gravatar for Enis Afgan
7.5 years ago by
Enis Afgan680
Enis Afgan680 wrote:
Hi Matloob, Others should contribute their experiences as well but for the Galaxy VM and cloud, we use Ubuntu 10.04. Also, to automate the machine setup, we have a scripts that perform all of the required setup steps; the scripts are usable by anyone for a range of machines and are available here: https://bitbucket.org/afgane/mi-deployment/ Good luck, Enis On Tue, Jun 7, 2011 at 8:00 AM, Matloob Khushi <matloob.khushi@sydney.edu.au <="" div="">
ADD COMMENTlink written 7.5 years ago by Enis Afgan680
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gravatar for Enis Afgan
7.5 years ago by
Enis Afgan680
Enis Afgan680 wrote:
Hi Ron, Yes, it's the 64-bit Ubuntu and we've opted to go with the 10.04 version because it's LTS version, although I don't think there were any changes in the more recent versions that will break things in the scripts. Enis
ADD COMMENTlink written 7.5 years ago by Enis Afgan680
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gravatar for Nate Coraor
7.5 years ago by
Nate Coraor3.2k
United States
Nate Coraor3.2k wrote:
Hi Matloob, The public Galaxy server runs Solaris 10. The tools run on two clusters, one running Debian Squeeze and the other running RHEL 5.6, both amd64. You might find that a specialized distribution like BioLinux or Scientific Linux may pre-package many of the tools you're interested in, which would make setup a bit easier. --nate
ADD COMMENTlink written 7.5 years ago by Nate Coraor3.2k
I have instances running on RHEL 5 and CentOS 5 and never had any OS-specific issues, works great. -Leandro
ADD REPLYlink written 7.5 years ago by Leandro Hermida80
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gravatar for Louise-AmélieSchmitt
7.5 years ago by
Louise-AmélieSchmitt160 wrote:
Hi, Our local instance runs on CentOS 5 and is happy with it :) We didn't have the choice though. Regards L-A Le 07/06/2011 14:00, Matloob Khushi a écrit :
ADD COMMENTlink written 7.5 years ago by Louise-AmélieSchmitt160
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