Question: Gorilla VCF File
gravatar for kerna1992
3.7 years ago by
United States
kerna19920 wrote:


I am attempting to manipulate a VCF file containing the genomes of 28 gorillas. Specifically, I was wondering if the VCF tools in Galaxy's NGS toolbox, in conjunction with VCFlib, could be used to locate insertions and/or deletions at specific genomic sites. If so, you could direct me to the specific tools that would be most appropriate?


gorilla vcf • 984 views
ADD COMMENTlink modified 3.7 years ago by Jennifer Hillman Jackson25k • written 3.7 years ago by kerna19920
gravatar for Jennifer Hillman Jackson
3.7 years ago by
United States
Jennifer Hillman Jackson25k wrote:


The tool "VCF-BEDintersect" will pull out specified regions. Use "VCFfilter" first if you want to limit the results to just the inserts/deletions in the VCF.

Thanks, Jen, Galaxy team

ADD COMMENTlink written 3.7 years ago by Jennifer Hillman Jackson25k
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