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Question: Gorilla VCF File
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gravatar for kerna1992
3.7 years ago by
kerna1992 • 0
United States
kerna1992 • 0 wrote:

Greetings,

I am attempting to manipulate a VCF file containing the genomes of 28 gorillas. Specifically, I was wondering if the VCF tools in Galaxy's NGS toolbox, in conjunction with VCFlib, could be used to locate insertions and/or deletions at specific genomic sites. If so, you could direct me to the specific tools that would be most appropriate?

Thanks
gorilla vcf • 984 views
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modified 3.7 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.7 years ago by kerna1992 • 0
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gravatar for Jennifer Hillman Jackson
3.7 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The tool "VCF-BEDintersect" will pull out specified regions. Use "VCFfilter" first if you want to limit the results to just the inserts/deletions in the VCF.

Thanks, Jen, Galaxy team
ADD COMMENT • link written 3.7 years ago by Jennifer Hillman Jackson ♦ 25k
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