Question: Workflow page is blank
1
gravatar for mandorodriguez
14 months ago by
USA, San Antonio, UTSA
mandorodriguez • 10 wrote:

I did a recent update of galaxy for my a private server at my university and now the workflow page that had previously saved workflows is empty. Even if I try to extract a new one and save it, the page is empty. I don't see any obvious errors in the paster.log file. Any ideas what's going on here?

ADD COMMENT • link • modified 14 months ago • written 14 months ago by mandorodriguez • 10

A few more details would help:

  • What was the original Galaxy version
  • What is the upgraded Galaxy version
  • How was the update done? (method)

Thanks, Jen, Galaxy team

ADD REPLY • link written 14 months ago by Jennifer Hillman Jackson ♦ 25k

Not sure what the previous verison was but it was maybe a year old. I updated by pulling from github to the newest version 18.01 and running the manage_db.sh script when prompted so it could update the postgres database.

ADD REPLY • link written 14 months ago by mandorodriguez • 10
1
gravatar for Dannon Baker
14 months ago by
Dannon Baker ♦ 3.7k
United States
Dannon Baker ♦ 3.7k wrote:

Could you please open the javascript console when on the page, then refresh the page, and look to see if there are any errors to report? This way this page was generated has changed recently, and may be a cause for the error you're seeing.

Let me know if you need any more help finding the console errors, hopefully this is a simple bug to fix!

ADD COMMENT • link written 14 months ago by Dannon Baker ♦ 3.7k
0
gravatar for mandorodriguez
14 months ago by
USA, San Antonio, UTSA
mandorodriguez • 10 wrote:

I got two 404 Not Found Errors when I loaded it.

ADD COMMENT • link written 14 months ago by mandorodriguez • 10

Can you list which URLs exactly, and what version you updated to?

ADD REPLY • link modified 14 months ago • written 14 months ago by Dannon Baker ♦ 3.7k

Nevermind, I figured out the problem. I'll try to get a fix out shortly.

ADD REPLY • link written 14 months ago by Dannon Baker ♦ 3.7k
0
gravatar for mandorodriguez
14 months ago by
USA, San Antonio, UTSA
mandorodriguez • 10 wrote:

I recently did the pull so the version.py has

VERSION_MAJOR = "18.01" VERSION_MINOR = "dev"

The error is here

ADD COMMENT • link written 14 months ago by mandorodriguez • 10

Yep, I figured out the problem here; proxy prefix isn't supported in a few places and I need to fix them.

ADD REPLY • link written 14 months ago by Dannon Baker ♦ 3.7k

Okies, thanks. I'll keep an eye out for the update.

ADD REPLY • link written 14 months ago by mandorodriguez • 10

https://github.com/galaxyproject/galaxy/pull/4705 is the pull request that will fix this particular problem, but I'm looking for similar errors to lump them into that change.

ADD REPLY • link written 14 months ago by Dannon Baker ♦ 3.7k

Another question on this. My users existing workflows showed up after this but when she opens the workflow the sentence that is under the headings that explains it is gone. Also names of the heads just say input where as before she had it say what it was (e.x reference genome). Is that text there and just not displaying?

Thanks

enter image description here

ADD REPLY • link modified 14 months ago • written 14 months ago by mandorodriguez • 10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 169 users visited in the last hour