Question: Workflow page is blank
1
gravatar for mandorodriguez
8 months ago by
USA, San Antonio, UTSA
mandorodriguez10 wrote:

I did a recent update of galaxy for my a private server at my university and now the workflow page that had previously saved workflows is empty. Even if I try to extract a new one and save it, the page is empty. I don't see any obvious errors in the paster.log file. Any ideas what's going on here?

ADD COMMENTlink modified 8 months ago • written 8 months ago by mandorodriguez10

A few more details would help:

  • What was the original Galaxy version
  • What is the upgraded Galaxy version
  • How was the update done? (method)

Thanks, Jen, Galaxy team

ADD REPLYlink written 8 months ago by Jennifer Hillman Jackson25k

Not sure what the previous verison was but it was maybe a year old. I updated by pulling from github to the newest version 18.01 and running the manage_db.sh script when prompted so it could update the postgres database.

ADD REPLYlink written 8 months ago by mandorodriguez10
1
gravatar for Dannon Baker
8 months ago by
Dannon Baker3.7k
United States
Dannon Baker3.7k wrote:

Could you please open the javascript console when on the page, then refresh the page, and look to see if there are any errors to report? This way this page was generated has changed recently, and may be a cause for the error you're seeing.

Let me know if you need any more help finding the console errors, hopefully this is a simple bug to fix!

ADD COMMENTlink written 8 months ago by Dannon Baker3.7k
0
gravatar for mandorodriguez
8 months ago by
USA, San Antonio, UTSA
mandorodriguez10 wrote:

I got two 404 Not Found Errors when I loaded it.

ADD COMMENTlink written 8 months ago by mandorodriguez10

Can you list which URLs exactly, and what version you updated to?

ADD REPLYlink modified 8 months ago • written 8 months ago by Dannon Baker3.7k

Nevermind, I figured out the problem. I'll try to get a fix out shortly.

ADD REPLYlink written 8 months ago by Dannon Baker3.7k
0
gravatar for mandorodriguez
8 months ago by
USA, San Antonio, UTSA
mandorodriguez10 wrote:

I recently did the pull so the version.py has

VERSION_MAJOR = "18.01" VERSION_MINOR = "dev"

The error is here

ADD COMMENTlink written 8 months ago by mandorodriguez10

Yep, I figured out the problem here; proxy prefix isn't supported in a few places and I need to fix them.

ADD REPLYlink written 8 months ago by Dannon Baker3.7k

Okies, thanks. I'll keep an eye out for the update.

ADD REPLYlink written 8 months ago by mandorodriguez10

https://github.com/galaxyproject/galaxy/pull/4705 is the pull request that will fix this particular problem, but I'm looking for similar errors to lump them into that change.

ADD REPLYlink written 8 months ago by Dannon Baker3.7k

Another question on this. My users existing workflows showed up after this but when she opens the workflow the sentence that is under the headings that explains it is gone. Also names of the heads just say input where as before she had it say what it was (e.x reference genome). Is that text there and just not displaying?

Thanks

enter image description here

ADD REPLYlink modified 8 months ago • written 8 months ago by mandorodriguez10
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