Question: Tfbs Search
0
Tony Oosterveen • 10 wrote:
Hello,
I am just starting to use galaxy, and I was wondering if there is a
simple way to search genome wide for clustering of custom
transcription
binding sites (preferentially with weight matrixes). All other
programs
(~10) I have used till so far have their limitations, either the
length
of the sequence they can handle is rather limited, they use only in
house transcription factor binding sites or they are not able to check
for evolutionary conservation.
Thanks,
Tony
Tony Oosterveen
Karolinska Institute
Stockholm
Sweden