Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Binding strength of chromosome regions
0
gravatar for cgard2
24 months ago by
cgard2 • 10
cgard2 • 10 wrote:

How do you determine the strength of binding site of a chromosome region? We need to report top 10 regions in chromosome of strongest binding.

chip-seq • 531 views
ADD COMMENT • link •
modified 23 months ago by Jennifer Hillman Jackson ♦ 25k • written 24 months ago by cgard2 • 10
0
gravatar for Jennifer Hillman Jackson
23 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

I am not sure what tool you are using, but once peaks are called the output can be filtered/compared to determine those with the most coverage/depth. See the tools in the group NGS: Peak Calling at Galaxy Main (http://usegalaxy.org) if you have not chosen one yet. Review the tool forms and 3rd party documentation to understand the output metrics and what they represent.

If you are looking for a tutorial and/or examples for how to perform the analysis, googling "galaxy chip-seq" brings up many learning options.

Thanks, Jen, Galaxy team
ADD COMMENT • link written 23 months ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 182 users visited in the last hour