Question: CummeRbund input from Cuffdiff output
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gravatar for roxy.zhang
18 months ago by
roxy.zhang • 0
roxy.zhang • 0 wrote:

Hello All

I just finished my Cuffdiff on a set of practice data, and I am planning to visualize my output in CummeRbund, however, it does not seem to accept Cuffdiff output. I find this very strange because in many protocols, CummeRbund is directly after Cuffdiff and it seems to use Cuffdiff output as input files. Therefore, I was wondering why this is happening to me and how to solve this? Thank you!

Best, Roxy

ADD COMMENT • link • modified 18 months ago by Jennifer Hillman Jackson ♦ 25k • written 18 months ago by roxy.zhang • 0
0
gravatar for Jennifer Hillman Jackson
18 months ago by
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

CummeRbund accepts the SQLite database generated from Cuffdiff. To produce the database, select that output option on the Cuffdiff tool form.

Thanks! Jen, Galaxy team

ADD COMMENT • link written 18 months ago by Jennifer Hillman Jackson ♦ 25k
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