Question: CummeRbund input from Cuffdiff output
gravatar for roxy.zhang
18 months ago by
roxy.zhang0 wrote:

Hello All

I just finished my Cuffdiff on a set of practice data, and I am planning to visualize my output in CummeRbund, however, it does not seem to accept Cuffdiff output. I find this very strange because in many protocols, CummeRbund is directly after Cuffdiff and it seems to use Cuffdiff output as input files. Therefore, I was wondering why this is happening to me and how to solve this? Thank you!

Best, Roxy

ADD COMMENTlink modified 18 months ago by Jennifer Hillman Jackson25k • written 18 months ago by roxy.zhang0
gravatar for Jennifer Hillman Jackson
18 months ago by
United States
Jennifer Hillman Jackson25k wrote:


CummeRbund accepts the SQLite database generated from Cuffdiff. To produce the database, select that output option on the Cuffdiff tool form.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 18 months ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 169 users visited in the last hour