Question: CummeRbund input from Cuffdiff output
0
gravatar for roxy.zhang
13 months ago by
roxy.zhang0
roxy.zhang0 wrote:

Hello All

I just finished my Cuffdiff on a set of practice data, and I am planning to visualize my output in CummeRbund, however, it does not seem to accept Cuffdiff output. I find this very strange because in many protocols, CummeRbund is directly after Cuffdiff and it seems to use Cuffdiff output as input files. Therefore, I was wondering why this is happening to me and how to solve this? Thank you!

Best, Roxy

ADD COMMENTlink modified 13 months ago by Jennifer Hillman Jackson25k • written 13 months ago by roxy.zhang0
0
gravatar for Jennifer Hillman Jackson
13 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

CummeRbund accepts the SQLite database generated from Cuffdiff. To produce the database, select that output option on the Cuffdiff tool form.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 13 months ago by Jennifer Hillman Jackson25k
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