Question: CummeRbund input from Cuffdiff output
0
gravatar for roxy.zhang
8 months ago by
roxy.zhang0
roxy.zhang0 wrote:

Hello All

I just finished my Cuffdiff on a set of practice data, and I am planning to visualize my output in CummeRbund, however, it does not seem to accept Cuffdiff output. I find this very strange because in many protocols, CummeRbund is directly after Cuffdiff and it seems to use Cuffdiff output as input files. Therefore, I was wondering why this is happening to me and how to solve this? Thank you!

Best, Roxy

ADD COMMENTlink modified 8 months ago by Jennifer Hillman Jackson23k • written 8 months ago by roxy.zhang0
0
gravatar for Jennifer Hillman Jackson
8 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

CummeRbund accepts the SQLite database generated from Cuffdiff. To produce the database, select that output option on the Cuffdiff tool form.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 8 months ago by Jennifer Hillman Jackson23k
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