Question: cufflinks error in the bam files
0
gravatar for shafnaasmy.v.s
19 months ago by
shafnaasmy.v.s10 wrote:

hi

my workflow was hisat-->stringtie-->cuffdiff

i added the bam files from hisat to cuff diff along with the cuffmerge result

Fatal error: Exit code 1 () Error: sort order of reads in BAMs must be the same

wat is the problem

plz help

cufflinks • 519 views
ADD COMMENTlink modified 18 months ago by Jennifer Hillman Jackson25k • written 19 months ago by shafnaasmy.v.s10
0
gravatar for Jennifer Hillman Jackson
18 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Please try resorting all inputs, including the BAM inputs and any reference annotation inputs (if used). This is how: https://galaxyproject.org/support/sort-your-inputs/

Thanks! Jen, Galaxy team

ADD COMMENTlink written 18 months ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 172 users visited in the last hour