Question: cufflinks error in the bam files
0
gravatar for shafnaasmy.v.s
8 months ago by
shafnaasmy.v.s10 wrote:

hi

my workflow was hisat-->stringtie-->cuffdiff

i added the bam files from hisat to cuff diff along with the cuffmerge result

Fatal error: Exit code 1 () Error: sort order of reads in BAMs must be the same

wat is the problem

plz help

cufflinks • 206 views
ADD COMMENTlink modified 8 months ago by Jennifer Hillman Jackson23k • written 8 months ago by shafnaasmy.v.s10
0
gravatar for Jennifer Hillman Jackson
8 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

Please try resorting all inputs, including the BAM inputs and any reference annotation inputs (if used). This is how: https://galaxyproject.org/support/sort-your-inputs/

Thanks! Jen, Galaxy team

ADD COMMENTlink written 8 months ago by Jennifer Hillman Jackson23k
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