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Question: Is it possibel to use the command line in galaxy?
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gravatar for jarnop97
20 months ago by
jarnop97 • 0
jarnop97 • 0 wrote:

Dear Users,

I want to configure the galaxy in such way that I can run tools/scripts from my command line (Ubuntu 16.04) on the galaxy server (not local). Just like you can ssh to a server with putty, but than with galaxy. Do you guys know if this is possible? And how I can accomplish that?

Searching on the web I already saw that you can register as admin (I have a account on galaxy), but adjusting config/galaxy.ini doesnt seem to work for me either... Do you guys also have a idea how to make this work?

Thanks in advance and I am eager to hear your answers ;D

software error galaxy • 475 views
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modified 20 months ago by Martin Čech ♦♦ 4.9k • written 20 months ago by jarnop97 • 0
1
gravatar for Martin Čech
20 months ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

Currently your best bet is to use an API library to communicate with Galaxy from cli. E.g. bioblend for python. Then you can write a python script and execute it from the cli.
ADD COMMENT • link written 20 months ago by Martin Čech ♦♦ 4.9k

thnks for your answer ;D

ADD REPLY • link written 19 months ago by jarnop97 • 0
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