Question: Tool to catalog SNPs
0
gravatar for tvillanueva
11 months ago by
tvillanueva0 wrote:

Is there a way in which I can catalog SNPs on Galaxy? I am attempting to use my BAM file, along with my reference genome and am having a hard time finding a tool in which it can not only identify the most frequent SNP, but also catalog them (if existent).

snp annotation • 252 views
ADD COMMENTlink modified 11 months ago by Jennifer Hillman Jackson24k • written 11 months ago by tvillanueva0
0
gravatar for Jennifer Hillman Jackson
11 months ago by
United States
Jennifer Hillman Jackson24k wrote:

Hello,

Please see this variant discovery pipeline for SNP summary and annotation tool options: https://galaxyproject.org/tutorials/var_dip/

Alternate methods are covered in other tutorials. Please see: https://galaxyproject.org/learn/

Thanks, Jen, Galaxy team

ADD COMMENTlink written 11 months ago by Jennifer Hillman Jackson24k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 73 users visited in the last hour