Question: Tool to catalog SNPs
0
gravatar for tvillanueva
8 months ago by
tvillanueva0 wrote:

Is there a way in which I can catalog SNPs on Galaxy? I am attempting to use my BAM file, along with my reference genome and am having a hard time finding a tool in which it can not only identify the most frequent SNP, but also catalog them (if existent).

snp annotation • 196 views
ADD COMMENTlink modified 8 months ago by Jennifer Hillman Jackson23k • written 8 months ago by tvillanueva0
0
gravatar for Jennifer Hillman Jackson
8 months ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello,

Please see this variant discovery pipeline for SNP summary and annotation tool options: https://galaxyproject.org/tutorials/var_dip/

Alternate methods are covered in other tutorials. Please see: https://galaxyproject.org/learn/

Thanks, Jen, Galaxy team

ADD COMMENTlink written 8 months ago by Jennifer Hillman Jackson23k
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