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Question: (Closed) Extracting reads from SNP list
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gravatar for d.angra
3.4 years ago by
d.angra • 50
United Kingdom
d.angra • 50 wrote:

Hi Galaxy experts

I am working on a non-model species and have created a denovo transcriptome assembly from more than 10 datasets, in order to identify SNPs. I have used galaxy to successfully obtain a list of good quality, high confidence SNPs. Now I need to extract the reads from the SNP list. Can any of you please advice me on tools to use in galaxy to help me achieve this?

 

Thanks in advance

 

Viva
snp • 797 views
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written 3.4 years ago by d.angra • 50

Hello d.angra!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

PS: Please avoid double posting the same question on the forum.
ADD REPLY • link written 3.4 years ago by Jennifer Hillman Jackson ♦ 25k
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