Hi, Does anyone know how to access the locally cached alignment files (MAF)? On the website: Under "Fetch Alignments/Sequences" > "Extract MAF blocks", you get to a screen with a pull-down menu labeled "MAF source". Here, there is an option "Locally cached alignments", however clicking on it does nothing. Am I missing something? Thanks, Merwin
The database metadata assignment for the input interval file needs to be assigned. Currently at Galaxy Main (http://usegalaxy.org), MAF indexes are available for the genome databases hg19 and dm3.
Thanks, Jen, Galaxy team
I added a metadata line to my interval data file, but under "Choose MAF source" it still says "No options available." This is the first two lines of my interval file:
track name=pleioRegions db=hg19
chr3 3400000 4500000 1 0.3 +
Any idea of what I'm doing wrong?
Thank you, Merwin