Question: UniProt ID mapping/retrieval crashing on
gravatar for jimhu
4 weeks ago by
jimhu20 wrote:


Fatal error: Exit code 1 () Traceback (most recent call last): File "/galaxy/main/shed_tools/", line 74, in <module> args.out.write(_map(que

input is a tabular file with a list of uniprot ids that I am trying to map to accessions in order to generate a fasta

ADD COMMENTlink modified 4 weeks ago by Jennifer Hillman Jackson25k • written 4 weeks ago by jimhu20

This is working on

ADD REPLYlink written 4 weeks ago by jimhu20
gravatar for Jennifer Hillman Jackson
4 weeks ago by
United States
Jennifer Hillman Jackson25k wrote:


This error is due to changes with the Uniprot API. An updated tool version (0.2) is available and I have requested that it be updated at Galaxy Main Details if interested:

Meanwhile, you can use the tool at Galaxy EU Be sure to use version 0.2. Both versions are listed in the tool panel at this server, but version 0.1 is the one with a problem and should be avoided.

Thanks for reporting the problem and our apologies for any confusion this caused! Jen, Galaxy team

ADD COMMENTlink written 4 weeks ago by Jennifer Hillman Jackson25k
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