Question: dna vcf file
gravatar for irusk
21 months ago by
irusk10 wrote:

I was just wondering if anyone could help me with my vcf file. I would appreciate it. Thanks

vcf file • 613 views
ADD COMMENTlink modified 21 months ago by Jennifer Hillman Jackson25k • written 21 months ago by irusk10

Try to be specific.

ADD REPLYlink written 21 months ago by Martin Čech ♦♦ 4.9k

Well Martin I would like someone to look at it and tell me what they think of it. I have looked at it for awhile but it seems suspicious thats all. Thanks

ADD REPLYlink written 21 months ago by irusk10
gravatar for Jennifer Hillman Jackson
21 months ago by
United States
Jennifer Hillman Jackson25k wrote:


Make sure the data was completely loaded into Galaxy (check size of uploaded file versus the Galaxy dataset), that the datatype "vcf" is assigned, and the metadata is intact (no yellow "warning" in the dataset's expanded box in the history).

If you haven't run any tools with it yet, give that a try. Or if you had prior problems, re-run now to see what the results are. There are many tool choices in the group "VCF Manipulation". Run a few if you encounter errors since some have more descriptive error messages than others.

If you cannot determine the problem from an error (if any come up), a bug report can be sent in if working at or if the problem can be reproduced there.

When reporting a bug that has an associated Biostar post, include a link to the post in the comments. And be sure to leave the datasets undeleted for the best feedback (inputs and outputs).

Thanks, Jen, Galaxy team

ADD COMMENTlink written 21 months ago by Jennifer Hillman Jackson25k
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