Question: Filter Varscan VCF
gravatar for braveen.joseph
18 months ago by
braveen.joseph20 wrote:


I have a VCF file obtained from the Varscan tool. I want to filter the variants based on "FREQ". I tried several VCF filter and select tools. None Seemed to be working.

For some reason, the VCF filter tool is not working properly. After filtering I get the same number of variants.

Can some one help me with this.


This is how the vcf file looks like

vcf filter varscan • 782 views
ADD COMMENTlink modified 18 months ago • written 18 months ago by braveen.joseph20

The example lines cannot be seen in the attached graphic (it must be a publicly accessible link).

Instead, you can write back with sample text in a reply comment with the content in quotes or with block text formatting (this matters for readability) or possibly a shared gist link if you have a github account.

Thanks! Jen, Galaxy team

ADD REPLYlink written 18 months ago by Jennifer Hillman Jackson25k
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