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Question: htseq-count not working
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gravatar for sanathoi.guru
22 months ago by
sanathoi.guru • 10
sanathoi.guru • 10 wrote:

htseq-count is not working. Its been showing "!" since 48hrs. Anyone having similar problem like this???
rna-seq galaxy htseq-count • 651 views
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modified 22 months ago by Jennifer Hillman Jackson ♦ 25k • written 22 months ago by sanathoi.guru • 10
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gravatar for Jennifer Hillman Jackson
22 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

For the first htseq-count job still queued (datasets 37 & 38), the input Tophat job needs to have the metadata "auto-detected". Use the link in the yellow box within input dataset 20 to do this. The job should then properly queue and begin to run. If it doesn't start to execute (yellow status color) after 12 hours or so, use the re-run button to launch it again, then permanently delete the original stalled job/datasets to kill them. Rerunning this way (rerun/delete) of grey queued jobs is generally not recommended or even needed for several reasons, but in your case specifically, this might be the only path forward.

For the second htseq-count job still queued (datasets 47 & 48), the input dataset 47 has been deleted/purged, making it unavailable to the tool. You will need to set up another job for this one, with the inputs left as active until the job completes.

Hope this helps, Jen, Galaxy team
ADD COMMENT • link written 22 months ago by Jennifer Hillman Jackson ♦ 25k
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